Transcript: ENST00000375543.2 ASPN-201

Description

asporin [Source:HGNC Symbol;Acc:HGNC:14872]

Gene Synonyms

FLJ20129, PLAP-1, SLRR1C

Location

Chromosome 9: 92,456,209-92,482,353 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 18 domains and features, is associated with 9943 variant alleles and maps to 350 oligo probes.

Gene

This transcript is a product of gene ENSG00000106819.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000375544.7	ASPN-202	2470	380aa	ENSP00000364694.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9BXN1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000375543.2	ASPN-201	2080	243aa	ENSP00000364693.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5TBF2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000651738.1	ASPN-204	583	124aa	ENSP00000498419.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A494C084	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000650794.1	ASPN-203	768	152aa	ENSP00000499088.1	Nonsense mediated decay	A0A494C1J0	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,080 bps, Translation length: 243 residues

Transcript Support Level (TSL)

TSL:2

Version

ENST00000375543.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000375543.2 ASPN-201

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Transcript: ENST00000375543.2 ASPN-201

Summary

About Us

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