Advanced notice of Ensembl Tools maintenance
Please note that due to planned maintenance, Ensembl Tools will be unavailable from Tuesday, September 9, at 08:30 AM BST until Wednesday, September 10, at 08:30 AM BST.
Jobs submitted during the maintenance window will be queued and processed once maintenance is complete. We apologise for the inconvenience.

Human (GRCh38.p14)
Description

C-X-C motif chemokine ligand 12 [Source:HGNC Symbol;Acc:HGNC:10672]

Gene Synonyms

PBSF, SCYB12, SDF-1A, SDF-1B, SDF1, SDF1A, SDF1B, TLSF-A, TLSF-B, TPAR1

Location
About this transcript

This transcript has 4 exons, is annotated with 66 domains and features, is associated with 7716 variant alleles and maps to 328 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000343575.11CXCL12-201192889aaENSP00000339913.6
 
Protein coding
CCDS7207P48061-2 NM_199168.4MANE SelectEnsembl CanonicalGENCODE PrimaryGENCODE BasicAPPRIS P4TSL:1
ENST00000374429.6CXCL12-203353293aaENSP00000363551.2
 
Protein coding
CCDS44373P48061-1 -GENCODE PrimaryGENCODE BasicAPPRIS ALT1TSL:1
ENST00000395794.2CXCL12-2051052140aaENSP00000379140.2
 
Protein coding
CCDS53527P48061-4 -GENCODE BasicTSL:1
ENST00000395793.7CXCL12-204665103aaENSP00000379139.3
 
Protein coding
CCDS60518P48061-7 -GENCODE PrimaryGENCODE BasicTSL:5
ENST00000374426.6CXCL12-202470119aaENSP00000363548.2
 
Protein coding
CCDS31186P48061-3 -GENCODE PrimaryGENCODE BasicTSL:1
ENST00000496375.1CXCL12-207803No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000488591.1CXCL12-206596No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 4, Coding exons: 4, Transcript length: 3,532 bps, Translation length: 93 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P48061

CCDS

This transcript is a member of the Human CCDS set: CCDS44373

Transcript Support Level (TSL)

TSL:1

Version

ENST00000374429.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.