Transcript: ENST00000374014.4 LINC00474-201

Description

long intergenic non-protein coding RNA 474 [Source:HGNC Symbol;Acc:HGNC:23367]

Gene Synonyms

C9ORF27, EST-YD1

Location

Chromosome 9: 115,888,159-115,925,451 reverse strand.

About this transcript

This transcript has 3 exons and maps to 294 oligo probes.

Gene

This transcript is a product of gene ENSG00000204148.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000832533.1	LINC00474-202	1116	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000832539.1	LINC00474-208	2171	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000832545.1	LINC00474-214	1531	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000832551.1	LINC00474-220	1488	No protein	-	lncRNA	-	-
ENST00000832557.1	LINC00474-226	1390	No protein	-	lncRNA	-	-
ENST00000832542.1	LINC00474-211	1313	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000832541.1	LINC00474-210	1290	No protein	-	lncRNA	-	-
ENST00000832546.1	LINC00474-215	1194	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000832547.1	LINC00474-216	1027	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000374014.4	LINC00474-201	1023	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000832544.1	LINC00474-213	1017	No protein	-	lncRNA	-	-
ENST00000832534.1	LINC00474-203	992	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000832536.1	LINC00474-205	955	No protein	-	lncRNA	-	-
ENST00000832540.1	LINC00474-209	817	No protein	-	lncRNA	-	-
ENST00000832552.1	LINC00474-221	760	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000832543.1	LINC00474-212	732	No protein	-	lncRNA	-	-
ENST00000832548.1	LINC00474-217	729	No protein	-	lncRNA	-	-
ENST00000832537.1	LINC00474-206	724	No protein	-	lncRNA	-	-
ENST00000832535.1	LINC00474-204	601	No protein	-	lncRNA	-	-
ENST00000832549.1	LINC00474-218	513	No protein	-	lncRNA	-	-
ENST00000832553.1	LINC00474-222	501	No protein	-	lncRNA	-	-
ENST00000832554.1	LINC00474-223	491	No protein	-	lncRNA	-	-
ENST00000832550.1	LINC00474-219	454	No protein	-	lncRNA	-	-
ENST00000832555.1	LINC00474-224	420	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000832538.1	LINC00474-207	351	No protein	-	lncRNA	-	-
ENST00000832556.1	LINC00474-225	237	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,023 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000374014.4

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000374014.4 LINC00474-201

Summary

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Transcript: ENST00000374014.4 LINC00474-201

Summary

About Us

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