Transcript: ENST00000373345.9 ARHGAP40-202

Description

Rho GTPase activating protein 40 [Source:HGNC Symbol;Acc:HGNC:16226]

Gene Synonyms

C20ORF95, DJ1100H13.4

Location

Chromosome 20: 38,601,809-38,650,653 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 12 domains and features, is associated with 21608 variant alleles and maps to 700 oligo probes.

Gene

This transcript is a product of gene ENSG00000124143.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000373345.9	ARHGAP40-202	2967	675aa	ENSP00000362442.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5TG30	NM_001164431.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000243967.8	ARHGAP40-201	1825	592aa	ENSP00000243967.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H7BXE0	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000414158.1	ARHGAP40-203	534	72aa	ENSP00000414822.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0Y7S1	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,967 bps, Translation length: 675 residues

MANE

This MANE Select transcript contains ENSP00000362442 and matches to NM_001164431.3 and NP_001157903.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5TG30

Transcript Support Level (TSL)

TSL:5

Version

ENST00000373345.9

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000373345.9 ARHGAP40-202

Summary

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Transcript: ENST00000373345.9 ARHGAP40-202

Summary

About Us

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