Human (GRCh38.p14)
Description

ATRX chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]

Gene Synonyms

JMS, MRX52, RAD54, XH2, XNP

Location
About this transcript

This transcript has 35 exons, is annotated with 112 domains and features, is associated with 98906 variant alleles and maps to 1808 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000373344.11ATRX-201111652492aaENSP00000362441.4
 
Protein coding
CCDS14434P46100-1 NM_000489.6MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P3TSL:1
ENST00000395603.7ATRX-202102182454aaENSP00000378967.3
 
Protein coding
CCDS14435P46100-4 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000675732.1ATRX-2245847858aaENSP00000502598.1
 
Protein coding
A0A6Q8PHA4 -GENCODE basic
ENST00000624166.3ATRX-21442721351aaENSP00000485103.1
 
Protein coding
A0A096LNL9 -TSL:1CDS 3' incomplete
ENST00000624032.3ATRX-2133071954aaENSP00000485253.1
 
Protein coding
A0A096LNW1 -TSL:1CDS 3' incomplete
ENST00000493470.2ATRX-2072967293aaENSP00000485408.1
 
Protein coding
A0A096LP59 -TSL:1CDS 5' incomplete
ENST00000623321.3ATRX-2111860528aaENSP00000485127.1
 
Protein coding
A0A096LNN3 -TSL:1CDS 3' incomplete
ENST00000400866.4ATRX-203814198aaENSP00000383663.3
 
Protein coding
H0Y3T0 -TSL:5CDS 5' incomplete
ENST00000622960.1ATRX-20862847aaENSP00000485587.1
 
Protein coding
A0A096LPG6 -TSL:5CDS 3' incomplete
ENST00000625063.3ATRX-218593198aaENSP00000485099.1
 
Protein coding
A0A096LNL6 -TSL:5CDS 5' and 3' incomplete
ENST00000624668.3ATRX-216583108aaENSP00000485100.1
 
Protein coding
A0A096LNL7 -TSL:5CDS 3' incomplete
ENST00000480283.5ATRX-20610455164aaENSP00000480196.1
 
Nonsense mediated decay
A0A087WWG0 -TSL:1
ENST00000623316.1ATRX-210803175aaENSP00000485274.1
 
Nonsense mediated decay
A0A096LNX6 -TSL:5CDS 5' incomplete
ENST00000623242.3ATRX-20972566aaENSP00000485183.1
 
Nonsense mediated decay
A0A096LNR8 -TSL:3CDS 5' incomplete
ENST00000635865.1ATRX-2191006aaENSP00000490150.1
 
Nonsense mediated decay
--TSL:5CDS 5' incomplete
ENST00000624193.1ATRX-215463No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000637175.1ATRX-222100No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000636152.1ATRX-220100No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000636868.1ATRX-221100No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000637959.1ATRX-22386No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000623706.3ATRX-2127245No protein-
 
Retained intron
--TSL:2
ENST00000675908.1ATRX-2254653No protein-
 
Retained intron
---
ENST00000624766.1ATRX-217580No protein-
 
Retained intron
--TSL:2
ENST00000460639.2ATRX-204461No protein-
 
Retained intron
--TSL:3
ENST00000479487.1ATRX-205408No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 35, Coding exons: 35, Transcript length: 11,165 bps, Translation length: 2,492 residues

MANE

This MANE Select transcript contains ENSP00000362441 and matches to NM_000489.6 and NP_000480.3

Uniprot

This transcript corresponds to the following Uniprot identifiers: P46100

CCDS

This transcript is a member of the Human CCDS set: CCDS14434

Transcript Support Level (TSL)

TSL:1

Version

ENST00000373344.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.