Transcript: ENST00000373249.6 SAYSD1-202

Description

SAYSVFN motif domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21025]

Gene Synonyms

C6ORF64, FLJ11101

Location

Chromosome 6: 39,104,085-39,115,193 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 4584 variant alleles and maps to 366 oligo probes.

Gene

This transcript is a product of gene ENSG00000112167.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000229903.5	SAYSD1-201	2018	183aa	ENSP00000229903.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4840	Q9NPB0-1	NM_018322.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000703663.1	SAYSD1-204	7357	101aa	ENSP00000515418.1	Nonsense mediated decay		A0A994J6I1	-	-
ENST00000481599.2	SAYSD1-203	6403	74aa	ENSP00000515420.1	Nonsense mediated decay		A0A994J3Z7	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000703664.1	SAYSD1-205	3071	94aa	ENSP00000515419.1	Nonsense mediated decay		A0A994J4E3	-	-
ENST00000373249.6	SAYSD1-202	3047	70aa	ENSP00000362346.2	Nonsense mediated decay		-	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 3,047 bps, Translation length: 70 residues

Transcript Support Level (TSL)

TSL:1

Version

ENST00000373249.6

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000373249.6 SAYSD1-202

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Transcript: ENST00000373249.6 SAYSD1-202

Summary

About Us

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