Transcript: ENST00000370017.9 FNDC7-201

Description

fibronectin type III domain containing 7 [Source:HGNC Symbol;Acc:HGNC:26668]

Gene Synonyms

FLJ35838

Location

Chromosome 1: 108,712,908-108,742,749 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 31 domains and features, is associated with 12733 variant alleles and maps to 424 oligo probes.

Gene

This transcript is a product of gene ENSG00000143107.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000370017.9	FNDC7-201	3090	733aa	ENSP00000359034.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44185	Q5VTL7	NM_001144937.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000445274.1	FNDC7-202	1667	499aa	ENSP00000405986.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C2H6	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 3,090 bps, Translation length: 733 residues

MANE

This MANE Select transcript contains ENSP00000359034 and matches to NM_001144937.3 and NP_001138409.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5VTL7

CCDS

This transcript is a member of the Human CCDS set: CCDS44185

Transcript Support Level (TSL)

TSL:5

Version

ENST00000370017.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000370017.9 FNDC7-201

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Transcript: ENST00000370017.9 FNDC7-201

Summary

About Us

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