Transcript: ENST00000367355.7 LINC00862-201

Description

long intergenic non-protein coding RNA 862 [Source:HGNC Symbol;Acc:HGNC:21901]

Gene Synonyms

C1ORF98, SMIM16

Location

Chromosome 1: 200,342,541-200,373,840 reverse strand.

About this transcript

This transcript has 5 exons and maps to 270 oligo probes.

Gene

This transcript is a product of gene ENSG00000203721.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000760608.1	LINC00862-209	569	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000760614.1	LINC00862-215	2332	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000669359.2	LINC00862-206	1611	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000367355.7	LINC00862-201	1468	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000656731.1	LINC00862-205	1417	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000637098.1	LINC00862-204	1400	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000760630.1	LINC00862-231	1397	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000669708.1	LINC00862-207	1320	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000636153.1	LINC00862-203	1186	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000760615.1	LINC00862-216	1135	No protein	-	lncRNA	-	-
ENST00000760617.1	LINC00862-218	1068	No protein	-	lncRNA	-	-
ENST00000760631.1	LINC00862-232	1066	No protein	-	lncRNA	-	-
ENST00000760632.1	LINC00862-233	1006	No protein	-	lncRNA	-	-
ENST00000760612.1	LINC00862-213	988	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000760626.1	LINC00862-227	976	No protein	-	lncRNA	-	-
ENST00000760628.1	LINC00862-229	961	No protein	-	lncRNA	-	-
ENST00000367356.1	LINC00862-202	759	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000760620.1	LINC00862-221	738	No protein	-	lncRNA	-	-
ENST00000760618.1	LINC00862-219	685	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000760623.1	LINC00862-224	618	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000760622.1	LINC00862-223	614	No protein	-	lncRNA	-	-
ENST00000760621.1	LINC00862-222	613	No protein	-	lncRNA	-	-
ENST00000760610.1	LINC00862-211	604	No protein	-	lncRNA	-	-
ENST00000760609.1	LINC00862-210	599	No protein	-	lncRNA	-	-
ENST00000760624.1	LINC00862-225	513	No protein	-	lncRNA	-	-
ENST00000760611.1	LINC00862-212	511	No protein	-	lncRNA	-	-
ENST00000760629.1	LINC00862-230	485	No protein	-	lncRNA	-	-
ENST00000688178.2	LINC00862-208	421	No protein	-	lncRNA	-	-
ENST00000760619.1	LINC00862-220	416	No protein	-	lncRNA	-	-
ENST00000760613.1	LINC00862-214	401	No protein	-	lncRNA	-	-
ENST00000760616.1	LINC00862-217	344	No protein	-	lncRNA	-	-
ENST00000760627.1	LINC00862-228	341	No protein	-	lncRNA	-	-
ENST00000760625.1	LINC00862-226	313	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,468 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000367355.7

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000367355.7 LINC00862-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000367355.7 LINC00862-201

Summary

About Us

Get help

Our sister sites

Follow us