Transcript: ENST00000335426.9 SELENOV-201

Description

selenoprotein V [Source:HGNC Symbol;Acc:HGNC:30399]

Gene Synonyms

SELV

Location

Chromosome 19: 39,515,139-39,520,675 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 19 domains and features, is associated with 3259 variant alleles and maps to 262 oligo probes.

Gene

This transcript is a product of gene ENSG00000186838.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000335426.9	SELENOV-201	1667	346aa	ENSP00000333956.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54266	P59797	NM_182704.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000600586.1	SELENOV-203	481	73aa	ENSP00000470671.1	Nonsense mediated decay		M0QZN9	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000597876.1	SELENOV-202	645	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,667 bps, Translation length: 346 residues

MANE

This MANE Select transcript contains ENSP00000333956 and matches to NM_182704.2 and NP_874363.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P59797

CCDS

This transcript is a member of the Human CCDS set: CCDS54266

Transcript Support Level (TSL)

TSL:1

Version

ENST00000335426.9

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

selenocysteine [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000335426.9 SELENOV-201

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Transcript: ENST00000335426.9 SELENOV-201

Summary

About Us

Get help

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