Transcript: ENST00000331096.2 LINC01405-201

Description

long intergenic non-protein coding RNA 1405 [Source:HGNC Symbol;Acc:HGNC:50688]

Gene Synonyms

MASCC1

Location

Chromosome 12: 110,936,602-110,937,451 forward strand.

About this transcript

This transcript has 2 exons and maps to 235 oligo probes.

Gene

This transcript is a product of gene ENSG00000185847.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000781012.1	LINC01405-214	983	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654512.2	LINC01405-206	1945	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000547607.2	LINC01405-202	1834	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000657482.1	LINC01405-207	1607	No protein	-	lncRNA	-	-
ENST00000553177.8	LINC01405-204	1429	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000666099.3	LINC01405-210	1329	No protein	-	lncRNA	-	-
ENST00000658709.1	LINC01405-209	942	No protein	-	lncRNA	-	-
ENST00000691265.2	LINC01405-212	875	No protein	-	lncRNA	-	-
ENST00000781017.1	LINC01405-219	873	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000781019.1	LINC01405-221	743	No protein	-	lncRNA	-	-
ENST00000548368.7	LINC01405-203	718	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000781013.1	LINC01405-215	711	No protein	-	lncRNA	-	-
ENST00000781015.1	LINC01405-217	692	No protein	-	lncRNA	-	-
ENST00000781014.1	LINC01405-216	649	No protein	-	lncRNA	-	-
ENST00000781018.1	LINC01405-220	587	No protein	-	lncRNA	-	-
ENST00000686735.3	LINC01405-211	557	No protein	-	lncRNA	-	-
ENST00000781021.1	LINC01405-223	527	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658431.2	LINC01405-208	507	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000652865.2	LINC01405-205	493	No protein	-	lncRNA	-	-
ENST00000781020.1	LINC01405-222	432	No protein	-	lncRNA	-	-
ENST00000781016.1	LINC01405-218	424	No protein	-	lncRNA	-	-
ENST00000331096.2	LINC01405-201	364	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000691467.2	LINC01405-213	334	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 364 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000331096.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000331096.2 LINC01405-201

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Transcript: ENST00000331096.2 LINC01405-201

Summary

About Us

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