Transcript: ENST00000313946.13 FAM86EP-202

Description

family with sequence similarity 86, member A pseudogene [Source:NCBI gene (formerly Entrezgene);Acc:348926]

Location

Chromosome 4: 3,941,760-3,955,450 reverse strand.

About this transcript

This transcript has 4 exons and maps to 722 oligo probes.

Gene

This transcript is a product of gene ENSG00000290374.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000507301.6	FAM86EP-206	2824	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000735447.1	FAM86EP-220	3239	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000313946.13	FAM86EP-202	2880	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000735444.1	FAM86EP-217	2424	No protein	-	lncRNA	-	-
ENST00000735466.1	FAM86EP-239	2271	No protein	-	lncRNA	-	-
ENST00000735456.1	FAM86EP-229	2133	No protein	-	lncRNA	-	-
ENST00000735438.1	FAM86EP-211	2132	No protein	-	lncRNA	-	-
ENST00000735449.1	FAM86EP-222	2100	No protein	-	lncRNA	-	-
ENST00000735440.1	FAM86EP-213	2068	No protein	-	lncRNA	-	-
ENST00000735454.1	FAM86EP-227	2055	No protein	-	lncRNA	-	-
ENST00000735446.1	FAM86EP-219	2037	No protein	-	lncRNA	-	-
ENST00000735492.1	FAM86EP-265	2037	No protein	-	lncRNA	-	-
ENST00000735452.1	FAM86EP-225	2006	No protein	-	lncRNA	-	-
ENST00000510565.6	FAM86EP-207	1983	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000735443.1	FAM86EP-216	1981	No protein	-	lncRNA	-	-
ENST00000735453.1	FAM86EP-226	1902	No protein	-	lncRNA	-	-
ENST00000735451.1	FAM86EP-224	1811	No protein	-	lncRNA	-	-
ENST00000735439.1	FAM86EP-212	1779	No protein	-	lncRNA	-	-
ENST00000735448.1	FAM86EP-221	1769	No protein	-	lncRNA	-	-
ENST00000735442.1	FAM86EP-215	1768	No protein	-	lncRNA	-	-
ENST00000735489.1	FAM86EP-262	1755	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000735445.1	FAM86EP-218	1719	No protein	-	lncRNA	-	-
ENST00000735455.1	FAM86EP-228	1684	No protein	-	lncRNA	-	-
ENST00000735450.1	FAM86EP-223	1617	No protein	-	lncRNA	-	-
ENST00000735458.1	FAM86EP-231	1444	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000735504.1	FAM86EP-277	1411	No protein	-	lncRNA	-	-
ENST00000735501.1	FAM86EP-274	1363	No protein	-	lncRNA	-	-
ENST00000735490.1	FAM86EP-263	1313	No protein	-	lncRNA	-	-
ENST00000735482.1	FAM86EP-255	1274	No protein	-	lncRNA	-	-
ENST00000735507.1	FAM86EP-280	1269	No protein	-	lncRNA	-	-
ENST00000735505.1	FAM86EP-278	1266	No protein	-	lncRNA	-	-
ENST00000735493.1	FAM86EP-266	1242	No protein	-	lncRNA	-	-
ENST00000512092.6	FAM86EP-209	1237	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000735511.1	FAM86EP-284	1219	No protein	-	lncRNA	-	-
ENST00000735509.1	FAM86EP-282	1217	No protein	-	lncRNA	-	-
ENST00000511488.5	FAM86EP-208	1209	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000674264.1	FAM86EP-210	1200	No protein	-	lncRNA	-	-
ENST00000735497.1	FAM86EP-270	1196	No protein	-	lncRNA	-	-
ENST00000506770.6	FAM86EP-205	1173	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000735486.1	FAM86EP-259	1162	No protein	-	lncRNA	-	-
ENST00000735506.1	FAM86EP-279	1102	No protein	-	lncRNA	-	-
ENST00000735469.1	FAM86EP-242	1058	No protein	-	lncRNA	-	-
ENST00000735496.1	FAM86EP-269	1058	No protein	-	lncRNA	-	-
ENST00000735491.1	FAM86EP-264	1016	No protein	-	lncRNA	-	-
ENST00000735464.1	FAM86EP-237	1007	No protein	-	lncRNA	-	-
ENST00000735488.1	FAM86EP-261	950	No protein	-	lncRNA	-	-
ENST00000735471.1	FAM86EP-244	942	No protein	-	lncRNA	-	-
ENST00000735461.1	FAM86EP-234	938	No protein	-	lncRNA	-	-
ENST00000735498.1	FAM86EP-271	936	No protein	-	lncRNA	-	-
ENST00000735494.1	FAM86EP-267	931	No protein	-	lncRNA	-	-
ENST00000735463.1	FAM86EP-236	925	No protein	-	lncRNA	-	-
ENST00000735473.1	FAM86EP-246	923	No protein	-	lncRNA	-	-
ENST00000735499.1	FAM86EP-272	922	No protein	-	lncRNA	-	-
ENST00000502255.5	FAM86EP-203	869	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000735487.1	FAM86EP-260	856	No protein	-	lncRNA	-	-
ENST00000735470.1	FAM86EP-243	855	No protein	-	lncRNA	-	-
ENST00000735485.1	FAM86EP-258	849	No protein	-	lncRNA	-	-
ENST00000735465.1	FAM86EP-238	841	No protein	-	lncRNA	-	-
ENST00000735459.1	FAM86EP-232	837	No protein	-	lncRNA	-	-
ENST00000735441.1	FAM86EP-214	817	No protein	-	lncRNA	-	-
ENST00000735477.1	FAM86EP-250	817	No protein	-	lncRNA	-	-
ENST00000735476.1	FAM86EP-249	799	No protein	-	lncRNA	-	-
ENST00000735481.1	FAM86EP-254	790	No protein	-	lncRNA	-	-
ENST00000735468.1	FAM86EP-241	785	No protein	-	lncRNA	-	-
ENST00000735478.1	FAM86EP-251	769	No protein	-	lncRNA	-	-
ENST00000735495.1	FAM86EP-268	760	No protein	-	lncRNA	-	-
ENST00000735479.1	FAM86EP-252	745	No protein	-	lncRNA	-	-
ENST00000735474.1	FAM86EP-247	731	No protein	-	lncRNA	-	-
ENST00000735483.1	FAM86EP-256	730	No protein	-	lncRNA	-	-
ENST00000735502.1	FAM86EP-275	722	No protein	-	lncRNA	-	-
ENST00000735472.1	FAM86EP-245	719	No protein	-	lncRNA	-	-
ENST00000735475.1	FAM86EP-248	690	No protein	-	lncRNA	-	-
ENST00000735467.1	FAM86EP-240	685	No protein	-	lncRNA	-	-
ENST00000735457.1	FAM86EP-230	667	No protein	-	lncRNA	-	-
ENST00000735480.1	FAM86EP-253	642	No protein	-	lncRNA	-	-
ENST00000735503.1	FAM86EP-276	628	No protein	-	lncRNA	-	-
ENST00000735500.1	FAM86EP-273	610	No protein	-	lncRNA	-	-
ENST00000735460.1	FAM86EP-233	599	No protein	-	lncRNA	-	-
ENST00000735510.1	FAM86EP-283	533	No protein	-	lncRNA	-	-
ENST00000735484.1	FAM86EP-257	485	No protein	-	lncRNA	-	-
ENST00000735462.1	FAM86EP-235	442	No protein	-	lncRNA	-	-
ENST00000504375.1	FAM86EP-204	402	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000735508.1	FAM86EP-281	332	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,880 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000313946.13

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

overlaps pseudogene [Definitions]

Transcript: ENST00000313946.13 FAM86EP-202

Summary

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Transcript: ENST00000313946.13 FAM86EP-202

Summary

About Us

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