Transcript: ENST00000279249.3 CDC42EP2-201

Description

CDC42 effector protein 2 [Source:HGNC Symbol;Acc:HGNC:16263]

Gene Synonyms

BORG1, CEP2

Location

Chromosome 11: 65,314,866-65,322,417 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 11 domains and features, is associated with 3538 variant alleles and maps to 317 oligo probes.

Gene

This transcript is a product of gene ENSG00000149798.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000279249.3	CDC42EP2-201	1963	210aa	ENSP00000279249.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8099	O14613	NM_006779.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000533419.1	CDC42EP2-202	1279	210aa	ENSP00000431660.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8099	O14613	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,963 bps, Translation length: 210 residues

MANE

This MANE Select transcript contains ENSP00000279249 and matches to NM_006779.4 and NP_006770.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: O14613

CCDS

This transcript is a member of the Human CCDS set: CCDS8099

Transcript Support Level (TSL)

TSL:1

Version

ENST00000279249.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000279249.3 CDC42EP2-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000279249.3 CDC42EP2-201

Summary

About Us

Get help

Our sister sites

Follow us