Transcript: ENST00000275162.10 CLVS2-201

Description

clavesin 2 [Source:HGNC Symbol;Acc:HGNC:23046]

Gene Synonyms

BA160A10.4, C6ORF212, C6ORF213, RLBP1L2

Location

Chromosome 6: 122,996,235-123,072,925 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 18 domains and features, is associated with 32420 variant alleles and maps to 447 oligo probes.

Gene

This transcript is a product of gene ENSG00000146352.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000275162.10	CLVS2-201	11219	327aa	ENSP00000275162.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34525	Q5SYC1-1	NM_001010852.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000368438.1	CLVS2-202	1359	181aa	ENSP00000357423.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SYC1-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 11,219 bps, Translation length: 327 residues

MANE

This MANE Select transcript contains ENSP00000275162 and matches to NM_001010852.4 and NP_001010852.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5SYC1

CCDS

This transcript is a member of the Human CCDS set: CCDS34525

Transcript Support Level (TSL)

TSL:1

Version

ENST00000275162.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000275162.10 CLVS2-201

Summary

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Transcript: ENST00000275162.10 CLVS2-201

Summary

About Us

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