Human (GRCh38.p14)
Description

polypeptide N-acetylgalactosaminyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4123]

Gene Synonyms

GALNAC-T1

Location
About this transcript

This transcript has 12 exons, is annotated with 17 domains and features, is associated with 52879 variant alleles and maps to 682 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000269195.6GALNT1-2013970559aaENSP00000269195.4
 
Protein coding
CCDS11915Q10472-1 NM_020474.4MANE SelectEnsembl CanonicalGENCODE PrimaryGENCODE BasicAPPRIS P3TSL:1
ENST00000935563.1GALNT1-2116178559aaENSP00000605622.1
 
Protein coding
CCDS11915--GENCODE PrimaryGENCODE BasicAPPRIS P3
ENST00000935564.1GALNT1-2125641559aaENSP00000605623.1
 
Protein coding
CCDS11915--GENCODE BasicAPPRIS P3
ENST00000971167.1GALNT1-2224575559aaENSP00000641226.1
 
Protein coding
CCDS11915--GENCODE BasicAPPRIS P3
ENST00000971166.1GALNT1-2214417558aaENSP00000641225.1
 
Protein coding
--GENCODE PrimaryGENCODE BasicAPPRIS ALT1
ENST00000971168.1GALNT1-2234352559aaENSP00000641227.1
 
Protein coding
CCDS11915--GENCODE BasicAPPRIS P3
ENST00000909612.1GALNT1-2074143559aaENSP00000579671.1
 
Protein coding
CCDS11915--GENCODE BasicAPPRIS P3
ENST00000935565.1GALNT1-2134102559aaENSP00000605624.1
 
Protein coding
CCDS11915--GENCODE BasicAPPRIS P3
ENST00000971165.1GALNT1-2204026559aaENSP00000641224.1
 
Protein coding
CCDS11915--GENCODE BasicAPPRIS P3
ENST00000935566.1GALNT1-2143938557aaENSP00000605625.1
 
Protein coding
--GENCODE PrimaryGENCODE BasicAPPRIS ALT1
ENST00000971164.1GALNT1-2193932559aaENSP00000641223.1
 
Protein coding
CCDS11915--GENCODE BasicAPPRIS P3
ENST00000909614.1GALNT1-2093822559aaENSP00000579673.1
 
Protein coding
CCDS11915--GENCODE BasicAPPRIS P3
ENST00000935568.1GALNT1-2163596559aaENSP00000605627.1
 
Protein coding
CCDS11915--GENCODE PrimaryGENCODE BasicAPPRIS P3
ENST00000971172.1GALNT1-2273511559aaENSP00000641231.1
 
Protein coding
CCDS11915--GENCODE BasicAPPRIS P3
ENST00000935567.1GALNT1-2153346559aaENSP00000605626.1
 
Protein coding
CCDS11915--GENCODE BasicAPPRIS P3
ENST00000935570.1GALNT1-2183343559aaENSP00000605629.1
 
Protein coding
CCDS11915--GENCODE BasicAPPRIS P3
ENST00000971170.1GALNT1-2253340554aaENSP00000641229.1
 
Protein coding
--GENCODE PrimaryGENCODE Basic
ENST00000909613.1GALNT1-2083293559aaENSP00000579672.1
 
Protein coding
CCDS11915--GENCODE PrimaryGENCODE BasicAPPRIS P3
ENST00000971171.1GALNT1-2263285559aaENSP00000641230.1
 
Protein coding
CCDS11915--GENCODE BasicAPPRIS P3
ENST00000971169.1GALNT1-2243229559aaENSP00000641228.1
 
Protein coding
CCDS11915--GENCODE BasicAPPRIS P3
ENST00000935569.1GALNT1-2172868481aaENSP00000605628.1
 
Protein coding
--GENCODE Basic
ENST00000971174.1GALNT1-2292373559aaENSP00000641233.1
 
Protein coding
CCDS11915--GENCODE BasicAPPRIS P3
ENST00000971173.1GALNT1-2281961557aaENSP00000641232.1
 
Protein coding
--GENCODE BasicAPPRIS ALT1
ENST00000909615.1GALNT1-2101955559aaENSP00000579674.1
 
Protein coding
CCDS11915--GENCODE BasicAPPRIS P3
ENST00000591081.1GALNT1-2051120105aaENSP00000466411.1
 
Protein coding
Q10472-2 -GENCODE PrimaryGENCODE BasicTSL:1
ENST00000591924.5GALNT1-206542105aaENSP00000465699.1
 
Protein coding
Q10472-2 -TSL:3CDS 3' incomplete
ENST00000589189.5GALNT1-2032346387aaENSP00000465341.1
 
Nonsense mediated decay
K7EJV8 -TSL:5
ENST00000590654.1GALNT1-204177050aaENSP00000465452.1
 
Nonsense mediated decay
K7EK46 -TSL:5
ENST00000586725.1GALNT1-202272No protein-
 
Protein coding CDS not defined
--TSL:5
Statistics

Exons: 12, Coding exons: 11, Transcript length: 3,970 bps, Translation length: 559 residues

MANE

This MANE Select transcript contains ENSP00000269195 and matches to NM_020474.4 and NP_065207.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q10472

CCDS

This transcript is a member of the Human CCDS set: CCDS11915

Transcript Support Level (TSL)

TSL:1

Version

ENST00000269195.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.