Human (GRCh38.p14)
Description

5'-3' exoribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:30654]

Gene Synonyms

SEP1

About this transcript

This transcript has 42 exons, is annotated with 24 domains and features, is associated with 59248 variant alleles and maps to 1331 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000392981.7XRN1-202100791694aaENSP00000376707.2
 
Protein coding
CCDS63801Q8IZH2-2 NM_001282857.2MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P3TSL:1
ENST00000264951.8XRN1-201101431706aaENSP00000264951.4
 
Protein coding
CCDS3123Q8IZH2-1 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000498077.6XRN1-21456001160aaENSP00000419683.2
 
Protein coding
H7C5E4 -TSL:5CDS 5' incomplete
ENST00000463916.5XRN1-2032075459aaENSP00000418404.1
 
Protein coding
CCDS75028Q8IZH2-3 -GENCODE basicTSL:1
ENST00000477237.1XRN1-211686165aaENSP00000420634.1
 
Protein coding
C9JCZ8 -TSL:5CDS 3' incomplete
ENST00000486211.1XRN1-2121180107aaENSP00000420786.1
 
Nonsense mediated decay
F8WDA0 -TSL:2
ENST00000489241.1XRN1-21339363aaENSP00000419219.1
 
Nonsense mediated decay
H7C583 -TSL:3CDS 5' incomplete
ENST00000465074.1XRN1-204643No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000468894.1XRN1-207318No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000472697.5XRN1-2102652No protein-
 
Retained intron
--TSL:2
ENST00000467077.1XRN1-206674No protein-
 
Retained intron
--TSL:3
ENST00000470537.1XRN1-208669No protein-
 
Retained intron
--TSL:2
ENST00000472625.1XRN1-209420No protein-
 
Retained intron
--TSL:5
ENST00000465507.1XRN1-205322No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 42, Coding exons: 42, Transcript length: 10,143 bps, Translation length: 1,706 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IZH2

CCDS

This transcript is a member of the Human CCDS set: CCDS3123

Transcript Support Level (TSL)

TSL:1

Version

ENST00000264951.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.