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Human (GRCh38.p14)
Description

nucleoporin 54 [Source:HGNC Symbol;Acc:HGNC:17359]

Location
About this transcript

This transcript has 12 exons, is annotated with 44 domains and features, is associated with 15533 variant alleles and maps to 505 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000264883.8NUP54-2012249507aaENSP00000264883.3
 
Protein coding
CCDS3576Q7Z3B4-1 NM_017426.4MANE SelectEnsembl CanonicalGENCODE PrimaryGENCODE BasicAPPRIS P3TSL:1
ENST00000695547.1NUP54-2194320561aaENSP00000512004.1
 
Protein coding
A0A8Q3WKJ4 -GENCODE PrimaryGENCODE Basic
ENST00000695552.2NUP54-2244226289aaENSP00000512010.2
 
Protein coding
A0A8Z5F6C8 -GENCODE PrimaryGENCODE Basic
ENST00000515460.6NUP54-2172413327aaENSP00000512009.1
 
Protein coding
A0A8Q3WLP2 -GENCODE BasicTSL:3
ENST00000869722.1NUP54-2312267503aaENSP00000539781.1
 
Protein coding
--GENCODE PrimaryGENCODE Basic
ENST00000925857.1NUP54-2362265502aaENSP00000595916.1
 
Protein coding
--GENCODE PrimaryGENCODE Basic
ENST00000869721.1NUP54-2302258471aaENSP00000539780.1
 
Protein coding
--GENCODE PrimaryGENCODE Basic
ENST00000869724.1NUP54-2332252508aaENSP00000539783.1
 
Protein coding
--GENCODE PrimaryGENCODE BasicAPPRIS ALT1
ENST00000869725.1NUP54-2342125470aaENSP00000539784.1
 
Protein coding
--GENCODE Basic
ENST00000869723.1NUP54-2322017423aaENSP00000539782.1
 
Protein coding
--GENCODE Basic
ENST00000514987.6NUP54-2161949459aaENSP00000421304.1
 
Protein coding
CCDS63998Q7Z3B4-3 -GENCODE PrimaryGENCODE BasicTSL:2
ENST00000508465.6NUP54-2061809438aaENSP00000512008.1
 
Protein coding
A0A8Q3WKK2 -GENCODE BasicTSL:3
ENST00000925856.1NUP54-2351679303aaENSP00000595915.1
 
Protein coding
--GENCODE Basic
ENST00000695546.1NUP54-2186815138aaENSP00000512003.1
 
Nonsense mediated decay
D6RFI8 --
ENST00000695553.2NUP54-225255283aaENSP00000512011.1
 
Nonsense mediated decay
A0A8Q3WKL3 --
ENST00000695549.1NUP54-2212411380aaENSP00000512005.1
 
Nonsense mediated decay
A0A8Q3WL42 --
ENST00000695556.1NUP54-2282156303aaENSP00000512014.1
 
Nonsense mediated decay
A0A8Q3SHX2 --
ENST00000695551.1NUP54-2232151243aaENSP00000512007.1
 
Nonsense mediated decay
A0A8Q3WKP8 --
ENST00000507257.6NUP54-2052002102aaENSP00000425243.1
 
Nonsense mediated decay
D6RBF7 -TSL:5
ENST00000695550.2NUP54-2221943102aaENSP00000512006.2
 
Nonsense mediated decay
D6RBF7 --
ENST00000695554.1NUP54-2261917253aaENSP00000512012.1
 
Nonsense mediated decay
A0A8Q3WLY5 --
ENST00000502850.5NUP54-2021604138aaENSP00000426609.1
 
Nonsense mediated decay
D6RFI8 -TSL:1
ENST00000695555.2NUP54-227146884aaENSP00000512013.1
 
Nonsense mediated decay
A0A8Q3SI16 --
ENST00000512151.5NUP54-2111385102aaENSP00000424172.1
 
Nonsense mediated decay
D6RBF7 -TSL:2
ENST00000513352.1NUP54-21357984aaENSP00000424389.1
 
Nonsense mediated decay
D6RB65 -TSL:4
ENST00000695557.2NUP54-2292272No protein-
 
Protein coding CDS not defined
---
ENST00000695548.1NUP54-2202234No protein-
 
Protein coding CDS not defined
---
ENST00000508583.6NUP54-207633No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000514307.5NUP54-214566No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000506098.5NUP54-204548No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000510884.5NUP54-210441No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000514313.2NUP54-2154547No protein-
 
Retained intron
--TSL:2
ENST00000510569.6NUP54-2092754No protein-
 
Retained intron
--TSL:5
ENST00000508604.5NUP54-2081671No protein-
 
Retained intron
--TSL:2
ENST00000513248.1NUP54-212531No protein-
 
Retained intron
--TSL:2
ENST00000504173.1NUP54-203314No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 12, Coding exons: 12, Transcript length: 2,249 bps, Translation length: 507 residues

MANE

This MANE Select transcript contains ENSP00000264883 and matches to NM_017426.4 and NP_059122.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z3B4

CCDS

This transcript is a member of the Human CCDS set: CCDS3576

Transcript Support Level (TSL)

TSL:1

Version

ENST00000264883.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.