Transcript: ENST00000262962.12 YJU2-201

Description

YJU2 splicing factor homolog [Source:HGNC Symbol;Acc:HGNC:25518]

Gene Synonyms

CCDC94, FLJ10374

Location

Chromosome 19: 4,247,080-4,269,088 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 15 domains and features, is associated with 11677 variant alleles and maps to 338 oligo probes.

Gene

This transcript is a product of gene ENSG00000105248.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000262962.12	YJU2-201	1431	323aa	ENSP00000262962.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12124	Q9BW85	NM_018074.6	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000596496.1	YJU2-202	800	160aa	ENSP00000472772.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R2S3	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,431 bps, Translation length: 323 residues

MANE

This MANE Select transcript contains ENSP00000262962 and matches to NM_018074.6 and NP_060544.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BW85

CCDS

This transcript is a member of the Human CCDS set: CCDS12124

Transcript Support Level (TSL)

TSL:1

Version

ENST00000262962.12

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000262962.12 YJU2-201

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Transcript: ENST00000262962.12 YJU2-201

Summary

About Us

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