Transcript: ENST00000262365.9 FAM86B2-201

Description

family with sequence similarity 86 member B2 [Source:HGNC Symbol;Acc:HGNC:32222]

Location

Chromosome 8: 12,424,421-12,436,400 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 6 domains and features, is associated with 7930 variant alleles and maps to 1356 oligo probes.

Gene

This transcript is a product of gene ENSG00000145002.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000262365.9	FAM86B2-201	2518	330aa	ENSP00000262365.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59092	P0C5J1	NM_001137610.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000685726.1	FAM86B2-205	2223	71aa	ENSP00000508501.1	Nonsense mediated decay		A0A8I5KNE8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000687060.1	FAM86B2-206	2158	153aa	ENSP00000510323.1	Nonsense mediated decay		-	-	-
ENST00000687949.1	FAM86B2-207	2017	126aa	ENSP00000510499.1	Nonsense mediated decay		A0A8I5KZ44	-	-
ENST00000527331.6	FAM86B2-203	1295	187aa	ENSP00000432491.2	Nonsense mediated decay		E9PQV7	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000532480.6	FAM86B2-204	1171	105aa	ENSP00000436338.2	Nonsense mediated decay		E9PM45	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000309608.7	FAM86B2-202	953	66aa	ENSP00000311330.7	Nonsense mediated decay		E9PLW5	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 2,518 bps, Translation length: 330 residues

MANE

This MANE Select transcript contains ENSP00000262365 and matches to NM_001137610.3 and NP_001131082.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P0C5J1

CCDS

This transcript is a member of the Human CCDS set: CCDS59092

Transcript Support Level (TSL)

TSL:5

Version

ENST00000262365.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

CAGE supported TSS [Definitions]

RNA-Seq supported only

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000262365.9 FAM86B2-201

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Transcript: ENST00000262365.9 FAM86B2-201

Summary

About Us

Get help

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