Advanced notice of Ensembl Tools maintenance
Please note that due to planned maintenance, Ensembl Tools will be unavailable from Tuesday, September 9, at 08:30 AM BST until Wednesday, September 10, at 08:30 AM BST.
Jobs submitted during the maintenance window will be queued and processed once maintenance is complete. We apologise for the inconvenience.

Human (GRCh38.p14)
Description

retinoic acid receptor alpha [Source:HGNC Symbol;Acc:HGNC:9864]

Gene Synonyms

NR1B1, RAR, RAR-ALPHA, RARALPHA

Location
About this transcript

This transcript has 9 exons, is annotated with 59 domains and features, is associated with 22533 variant alleles and maps to 724 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000254066.10RARA-2013275462aaENSP00000254066.5
 
Protein coding
CCDS11366P10276-1 NM_000964.4MANE SelectEnsembl CanonicalGENCODE PrimaryGENCODE BasicAPPRIS P4TSL:1
ENST00000857088.1RARA-2183485462aaENSP00000527147.1
 
Protein coding
CCDS11366Q6I9R7 -GENCODE PrimaryGENCODE BasicAPPRIS P4
ENST00000857086.1RARA-2163328462aaENSP00000527145.1
 
Protein coding
CCDS11366Q6I9R7 -GENCODE BasicAPPRIS P4
ENST00000920590.1RARA-2203120416aaENSP00000590649.1
 
Protein coding
--GENCODE Basic
ENST00000425707.7RARA-2063041365aaENSP00000389993.3
 
Protein coding
CCDS45671P10276-3 -GENCODE BasicTSL:1
ENST00000857087.1RARA-2172774462aaENSP00000527146.1
 
Protein coding
CCDS11366Q6I9R7 -GENCODE BasicAPPRIS P4
ENST00000857089.1RARA-2192610462aaENSP00000527148.1
 
Protein coding
CCDS11366Q6I9R7 -GENCODE BasicAPPRIS P4
ENST00000857082.1RARA-2122602462aaENSP00000527141.1
 
Protein coding
CCDS11366Q6I9R7 -GENCODE PrimaryGENCODE BasicAPPRIS P4
ENST00000857085.1RARA-2152561462aaENSP00000527144.1
 
Protein coding
CCDS11366Q6I9R7 -GENCODE BasicAPPRIS P4
ENST00000951717.1RARA-2222497462aaENSP00000621776.1
 
Protein coding
CCDS11366Q6I9R7 -GENCODE BasicAPPRIS P4
ENST00000857084.1RARA-2142490464aaENSP00000527143.1
 
Protein coding
--GENCODE PrimaryGENCODE BasicAPPRIS ALT1
ENST00000920591.1RARA-2212386462aaENSP00000590650.1
 
Protein coding
CCDS11366Q6I9R7 -GENCODE BasicAPPRIS P4
ENST00000857081.1RARA-2112385462aaENSP00000527140.1
 
Protein coding
CCDS11366Q6I9R7 -GENCODE BasicAPPRIS P4
ENST00000857083.1RARA-2132376416aaENSP00000527142.1
 
Protein coding
--GENCODE PrimaryGENCODE Basic
ENST00000394081.7RARA-2022285457aaENSP00000377643.3
 
Protein coding
CCDS42317P10276-2 -GENCODE PrimaryGENCODE BasicAPPRIS ALT1TSL:1
ENST00000394089.6RARA-2042024462aaENSP00000377649.2
 
Protein coding
CCDS11366P10276-1 -GENCODE BasicAPPRIS P4TSL:2
ENST00000394086.7RARA-2032008478aaENSP00000377648.3
 
Protein coding
A8MUP8 -GENCODE BasicTSL:2
ENST00000475125.1RARA-207813186aaENSP00000462514.1
 
Protein coding
J3KSJ4 -TSL:5CDS 3' incomplete
ENST00000577646.5RARA-20873366aaENSP00000464287.1
 
Protein coding
J3QRM2 -TSL:5CDS 3' incomplete
ENST00000420042.1RARA-2051052No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000582914.1RARA-210581No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000579727.5RARA-209564No protein-
 
Protein coding CDS not defined
--TSL:4
Statistics

Exons: 9, Coding exons: 8, Transcript length: 3,275 bps, Translation length: 462 residues

MANE

This MANE Select transcript contains ENSP00000254066 and matches to NM_000964.4 and NP_000955.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P10276

CCDS

This transcript is a member of the Human CCDS set: CCDS11366

Transcript Support Level (TSL)

TSL:1

Version

ENST00000254066.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.