Transcript: ENST00000231198.12 THG1L-201

Description

tRNA-histidine guanylyltransferase 1 like [Source:HGNC Symbol;Acc:HGNC:26053]

Gene Synonyms

FLJ11601, FLJ20546, HTHG1, ICF45, IHG-1

Location

Chromosome 5: 157,731,420-157,741,449 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 18 domains and features, is associated with 4810 variant alleles and maps to 433 oligo probes.

Gene

This transcript is a product of gene ENSG00000113272.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000231198.12	THG1L-201	2885	298aa	ENSP00000231198.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4341	Q9NWX6	NM_017872.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000521655.1	THG1L-202	919	124aa	ENSP00000428387.1	Nonsense mediated decay		E5RIQ8	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000523575.1	THG1L-203	576	34aa	ENSP00000431090.1	Nonsense mediated decay		H0YC78	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,885 bps, Translation length: 298 residues

MANE

This MANE Select transcript contains ENSP00000231198 and matches to NM_017872.5 and NP_060342.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NWX6

CCDS

This transcript is a member of the Human CCDS set: CCDS4341

Transcript Support Level (TSL)

TSL:1

Version

ENST00000231198.12

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000231198.12 THG1L-201

Summary

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Transcript: ENST00000231198.12 THG1L-201

Summary

About Us

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