Transcript: ENST00000231134.8 PCDHB5-201

Description

protocadherin beta 5 [Source:HGNC Symbol;Acc:HGNC:8690]

Gene Synonyms

DKFZP586B0217, PCDH-BETA5

Location

Chromosome 5: 141,135,206-141,138,615 forward strand.

About this transcript

This transcript has 1 exon, is annotated with 60 domains and features, is associated with 2864 variant alleles and maps to 407 oligo probes.

Gene

This transcript is a product of gene ENSG00000113209.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000231134.8	PCDHB5-201	3410	795aa	ENSP00000231134.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4247	Q9Y5E4	NM_015669.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000623915.1	PCDHB5-202	869	247aa	ENSP00000485464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A096LP94	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 3,410 bps, Translation length: 795 residues

MANE

This MANE Select transcript contains ENSP00000231134 and matches to NM_015669.5 and NP_056484.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5E4

CCDS

This transcript is a member of the Human CCDS set: CCDS4247

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000231134.8

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000231134.8 PCDHB5-201

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Transcript: ENST00000231134.8 PCDHB5-201

Summary

About Us

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