Advanced notice of Ensembl Tools maintenance
Please note that due to planned maintenance, Ensembl Tools will be unavailable from Tuesday, September 9, at 08:30 AM BST until Wednesday, September 10, at 08:30 AM BST.
Jobs submitted during the maintenance window will be queued and processed once maintenance is complete. We apologise for the inconvenience.

Human (GRCh38.p14)
Description

Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428]

Gene Synonyms

CSDA, CSDA1, DBPA, ZONAB

Location
About this transcript

This transcript has 10 exons, is annotated with 26 domains and features, is associated with 11024 variant alleles and maps to 442 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000228251.9YBX3-2011931372aaENSP00000228251.4
 
Protein coding
CCDS8630P16989-1 NM_003651.5MANE SelectEnsembl CanonicalGENCODE PrimaryGENCODE BasicAPPRIS P3TSL:1
ENST00000895017.1YBX3-2263413372aaENSP00000565076.1
 
Protein coding
CCDS8630--GENCODE BasicAPPRIS P3
ENST00000932593.1YBX3-2303329303aaENSP00000602652.1
 
Protein coding
CCDS44831--GENCODE PrimaryGENCODE BasicAPPRIS ALT1
ENST00000955210.1YBX3-2412124437aaENSP00000625269.1
 
Protein coding
--GENCODE PrimaryGENCODE Basic
ENST00000895010.1YBX3-2191994369aaENSP00000565069.1
 
Protein coding
--GENCODE PrimaryGENCODE BasicAPPRIS ALT2
ENST00000895012.1YBX3-2211993371aaENSP00000565071.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000932591.1YBX3-2281987372aaENSP00000602650.1
 
Protein coding
CCDS8630--GENCODE BasicAPPRIS P3
ENST00000955208.1YBX3-2391961382aaENSP00000625267.1
 
Protein coding
--GENCODE Basic
ENST00000895014.1YBX3-2231956378aaENSP00000565073.1
 
Protein coding
--GENCODE PrimaryGENCODE Basic
ENST00000955211.1YBX3-2421946378aaENSP00000625270.1
 
Protein coding
--GENCODE Basic
ENST00000932592.1YBX3-2291933370aaENSP00000602651.1
 
Protein coding
--GENCODE PrimaryGENCODE Basic
ENST00000895015.1YBX3-2241926368aaENSP00000565074.1
 
Protein coding
--GENCODE Basic
ENST00000955209.1YBX3-2401921369aaENSP00000625268.1
 
Protein coding
--GENCODE PrimaryGENCODE Basic
ENST00000955212.1YBX3-2431914368aaENSP00000625271.1
 
Protein coding
--GENCODE Basic
ENST00000955201.1YBX3-2321820331aaENSP00000625260.1
 
Protein coding
--GENCODE Basic
ENST00000955202.1YBX3-2331816330aaENSP00000625261.1
 
Protein coding
--GENCODE Basic
ENST00000895011.1YBX3-2201785300aaENSP00000565070.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000955206.1YBX3-2371759314aaENSP00000625265.1
 
Protein coding
--GENCODE PrimaryGENCODE Basic
ENST00000955205.1YBX3-2361750303aaENSP00000625264.1
 
Protein coding
CCDS44831--GENCODE BasicAPPRIS ALT1
ENST00000955207.1YBX3-2381743302aaENSP00000625266.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000895013.1YBX3-2221737302aaENSP00000565072.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000955204.1YBX3-2351725301aaENSP00000625263.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000955203.1YBX3-2341722303aaENSP00000625262.1
 
Protein coding
CCDS44831--GENCODE BasicAPPRIS ALT1
ENST00000895016.1YBX3-2251719299aaENSP00000565075.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000279550.11YBX3-2021708303aaENSP00000279550.7
 
Protein coding
CCDS44831P16989-2 -GENCODE BasicAPPRIS ALT1TSL:1
ENST00000955213.1YBX3-2441704299aaENSP00000625272.1
 
Protein coding
--GENCODE PrimaryGENCODE BasicAPPRIS ALT2
ENST00000955215.1YBX3-2461683336aaENSP00000625274.1
 
Protein coding
--GENCODE PrimaryGENCODE Basic
ENST00000955214.1YBX3-2451612300aaENSP00000625273.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000895018.1YBX3-2271555372aaENSP00000565077.1
 
Protein coding
CCDS8630--GENCODE BasicAPPRIS P3
ENST00000932594.1YBX3-2311382362aaENSP00000602653.1
 
Protein coding
--GENCODE PrimaryGENCODE Basic
ENST00000544622.4YBX3-21668592aaENSP00000485718.1
 
Protein coding
A0A0D9SEI8 -TSL:3CDS 5' incomplete
ENST00000546164.5YBX3-217805No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000541351.3YBX3-211717No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000366286.6YBX3-203704No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000540975.5YBX3-210677No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000539204.5YBX3-207649No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000544504.5YBX3-215583No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000546298.5YBX3-218564No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000540747.1YBX3-209548No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000544501.1YBX3-214181No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000540447.5YBX3-2086393No protein-
 
Retained intron
--TSL:2
ENST00000542002.5YBX3-212952No protein-
 
Retained intron
--TSL:2
ENST00000536823.5YBX3-206840No protein-
 
Retained intron
--TSL:2
ENST00000542641.5YBX3-213669No protein-
 
Retained intron
--TSL:4
ENST00000366290.2YBX3-204512No protein-
 
Retained intron
--TSL:2
ENST00000536107.5YBX3-205438No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,931 bps, Translation length: 372 residues

MANE

This MANE Select transcript contains ENSP00000228251 and matches to NM_003651.5 and NP_003642.3

Uniprot

This transcript corresponds to the following Uniprot identifiers: P16989

CCDS

This transcript is a member of the Human CCDS set: CCDS8630

Transcript Support Level (TSL)

TSL:1

Version

ENST00000228251.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.