Transcript: ENST00000199280.4 AQP2-201

Description

aquaporin 2 [Source:HGNC Symbol;Acc:HGNC:634]

Location

Chromosome 12: 49,950,737-49,958,878 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 38 domains and features, is associated with 3878 variant alleles and maps to 480 oligo probes.

Gene

This transcript is a product of gene ENSG00000167580.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000199280.4	AQP2-201	4180	271aa	ENSP00000199280.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8792	P41181	NM_000486.6	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000550862.1	AQP2-202	809	244aa	ENSP00000450022.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VPL3	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551526.5	AQP2-203	1762	223aa	ENSP00000447148.1	Nonsense mediated decay		F8W0S2	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 4,180 bps, Translation length: 271 residues

MANE

This MANE Select transcript contains ENSP00000199280 and matches to NM_000486.6 and NP_000477.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P41181

CCDS

This transcript is a member of the Human CCDS set: CCDS8792

Transcript Support Level (TSL)

TSL:1

Version

ENST00000199280.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000199280.4 AQP2-201

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Transcript: ENST00000199280.4 AQP2-201

Summary

About Us

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