Transcript: ENSSSCT00000034506.4 LTA-201

Description

lymphotoxin alpha [Source:NCBI gene (formerly Entrezgene);Acc:407742]

Gene Synonyms

TNFB

Location

About this transcript

This transcript has 4 exons, is annotated with 12 domains and features, is associated with 231 variant alleles and maps to 12 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000034506.4	LTA-201	1547	204aa	ENSSSCP00000028564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B9TSQ9 P26445	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000107784.1	LTA-202	1326	204aa	ENSSSCP00000082172.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B9TSQ9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,547 bps, Translation length: 204 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P26445

Version

ENSSSCT00000034506.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]