Transcript: ENSSSCT00000034091.4 SHROOM2-201

Description

shroom family member 2 [Source:VGNC Symbol;Acc:VGNC:110577]

Location

About this transcript

This transcript has 10 exons, is annotated with 45 domains and features, is associated with 4787 variant alleles and maps to 17 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000034091.4	SHROOM2-201	5960	1547aa	ENSSSCP00000030315.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1U8G7 K7GQZ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000013239.5	SHROOM2-202	5828	1503aa	ENSSSCP00000012885.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1XRM9 F1SG21	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 5,960 bps, Translation length: 1,547 residues

Version

ENSSSCT00000034091.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.