Transcript: ENSSSCT00000025768.3 LYSMD4-202

Description

LysM domain containing 4 [Source:VGNC Symbol;Acc:VGNC:89920]

Location

About this transcript

This transcript has 3 exons, is annotated with 10 domains and features, is associated with 254 variant alleles and maps to 24 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000025768.3	LYSMD4-202	2805	330aa	ENSSSCP00000028227.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D2A1W9 F1SRX4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000074702.1	LYSMD4-201	3674	321aa	ENSSSCP00000072446.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R7Z8 A0A8D1PQ35	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 2,805 bps, Translation length: 330 residues

Version

ENSSSCT00000025768.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.