Transcript: ENSSSCT00000012965.3 RUBCN-201

Description

rubicon autophagy regulator [Source:VGNC Symbol;Acc:VGNC:92509]

Location

About this transcript

This transcript has 20 exons, is annotated with 27 domains and features and is associated with 1066 variant alleles.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000042106.3	RUBCN-202	6587	986aa	ENSSSCP00000055761.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BGU7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000012965.3	RUBCN-201	3196	971aa	ENSSSCP00000012624.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TSE6 E5GAJ0	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 3,196 bps, Translation length: 971 residues

Version

ENSSSCT00000012965.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.