Transcript: ENSSSCT00000010309.5 LRCH1-201

Description

leucine rich repeats and calponin homology domain containing 1 [Source:VGNC Symbol;Acc:VGNC:89801]

Location

About this transcript

This transcript has 20 exons, is annotated with 31 domains and features, is associated with 12488 variant alleles and maps to 1 oligo probe.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000010309.5	LRCH1-201	3547	769aa	ENSSSCP00000010041.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RK06	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000039610.3	LRCH1-202	4049	702aa	ENSSSCP00000037945.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A2G7	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 3,547 bps, Translation length: 769 residues

Version

ENSSSCT00000010309.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.