Transcript: ENSSSCT00000006832.5 TOX-202

Description

thymocyte selection associated high mobility group box [Source:VGNC Symbol;Acc:VGNC:94322]

Location

Primary_assembly 4: 73,810,376-74,112,066 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 24 domains and features, is associated with 6089 variant alleles and maps to 12 oligo probes.

Gene

This transcript is a product of gene ENSSSCG00000006235.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000066536.2	TOX-203	1805	529aa	ENSSSCP00000067353.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QZI0 A0A8D2C7I3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000006832.5	TOX-202	3671	505aa	ENSSSCP00000006646.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SKV0 F1RT85	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000065833.2	TOX-201	1874	477aa	ENSSSCP00000035763.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZVR8 A0A8D0UTC8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 3,671 bps, Translation length: 505 residues

Version

ENSSSCT00000006832.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSSSCT00000006832.5 TOX-202

Summary

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Transcript: ENSSSCT00000006832.5 TOX-202

Summary

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