Transcript: ENSSSCT00000006200.6 LCN2-202

Description

lipocalin 2 [Source:VGNC Symbol;Acc:VGNC:89662]

Location

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features and is associated with 556 variant alleles.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000065649.4	LCN2-201	1079	199aa	ENSSSCP00000056109.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BJ65 A0A480UMD1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000006200.6	LCN2-202	1006	199aa	ENSSSCP00000006041.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480UMD1 F1RRX1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,006 bps, Translation length: 199 residues

Version

ENSSSCT00000006200.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.