Transcript: ENSSSCT00000001952.5 PKHD1-201

Description

PKHD1 ciliary IPT domain containing fibrocystin/polyductin [Source:VGNC Symbol;Acc:VGNC:91476]

Location

About this transcript

This transcript has 60 exons, is annotated with 57 domains and features and is associated with 16167 variant alleles.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000038709.3	PKHD1-202	12265	3999aa	ENSSSCP00000048329.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AWQ4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000001952.5	PKHD1-201	10219	3317aa	ENSSSCP00000001903.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RKV2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 60, Coding exons: 59, Transcript length: 10,219 bps, Translation length: 3,317 residues

Version

ENSSSCT00000001952.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Frameshift introns

Frameshift introns occur at intron number(s) 36.