Transcript: ENSSSCT00000001609.6 HLA-DRA-203

Description

MHC class II DR-alpha [Source:NCBI gene (formerly Entrezgene);Acc:100135040]

Location

About this transcript

This transcript has 5 exons, is annotated with 13 domains and features, is associated with 789 variant alleles and maps to 9 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000001609.6	HLA-DRA-203	5759	252aa	ENSSSCP00000001567.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1Q3M7 Q85ZW4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000107602.1	HLA-DRA-201	1243	252aa	ENSSSCP00000081992.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1Q3M7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000107604.1	HLA-DRA-204	1199	242aa	ENSSSCP00000081994.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSSSCT00000107603.1	HLA-DRA-202	1179	198aa	ENSSSCP00000081993.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 5,759 bps, Translation length: 252 residues

Version

ENSSSCT00000001609.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.