Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: ENSSSCT00000025097.4 VSX1-202

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Description

visual system homeobox 1 [Source:VGNC Symbol;Acc:VGNC:95566]

Location

Primary_assembly 17: 30,848,484-30,856,213 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 20 domains and features and is associated with 535 variant alleles.

Gene

This transcript is a product of gene ENSSSCG00000023887.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000025097.4	VSX1-202	2077	364aa	ENSSSCP00000023121.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1V1M7 I3LGC8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000073186.2	VSX1-201	880	227aa	ENSSSCP00000069305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R555	-

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Protein summary

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Protein domains for ENSSSCP00000023121.2

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