Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: ENSSSCT00000012267.5 SATB1-201

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Description

SATB homeobox 1 [Source:VGNC Symbol;Acc:VGNC:92587]

Location

Primary_assembly 13: 5,317,829-5,417,610 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 33 domains and features, is associated with 2985 variant alleles and maps to 52 oligo probes.

Gene

This transcript is a product of gene ENSSSCG00000011201.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000012267.5	SATB1-201	2592	751aa	ENSSSCP00000011952.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RS63	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000078103.2	SATB1-202	6225	735aa	ENSSSCP00000065307.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R426	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Protein summary

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Protein domains for ENSSSCP00000011952.4

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