Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ALMS1 ENSSSCG00000037977

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Description

ALMS1 centrosome and basal body associated protein [Source:VGNC Symbol;Acc:VGNC:85264]

Location

Primary_assembly 3: 69,253,750-69,417,189 reverse strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 5 transcripts (splice variants), 114 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000064085.3	ALMS1-205	13304	4332aa	ENSSSCP00000043254.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AH92 A0A4X1W1T2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000042211.3	ALMS1-201	13631	4303aa	ENSSSCP00000032168.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZKT4 A0A8D0T9J1	-
ENSSSCT00000042837.3	ALMS1-202	13481	4253aa	ENSSSCP00000044954.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AM18 A0A8D0T601	-
ENSSSCT00000054590.3	ALMS1-203	12965	4280aa	ENSSSCP00000043057.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AGS9	-
ENSSSCT00000026747.4	ALMS1-204	10411	3430aa	ENSSSCP00000028161.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0T606 I3LVK9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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