Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LIN28B ENSSSCG00000037612

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Description

lin-28 homolog B [Source:VGNC Symbol;Acc:VGNC:89729]

Location

Primary_assembly 1: 71,159,251-71,296,217 forward strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 2 transcripts (splice variants), 228 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000043008.3	LIN28B-202	1977	258aa	ENSSSCP00000054285.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VED0 A0A8D0JPJ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000088401.2	LIN28B-201	2000	250aa	ENSSSCP00000061562.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VH17 A0A8D0P4C4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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