Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SHMT1 ENSSSCG00000036208

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Description

serine hydroxymethyltransferase 1 [Source:VGNC Symbol;Acc:VGNC:92855]

Location

Primary_assembly 12: 60,416,463-60,435,450 forward strand.

Sscrofa11.1:CM000823.5

About this gene

This gene has 3 transcripts (splice variants), 218 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000063631.3	SHMT1-201	3262	646aa	ENSSSCP00000034672.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZSR0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000056927.3	SHMT1-202	2265	484aa	ENSSSCP00000050013.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZN35 A0A4X1SYS9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000057763.3	SHMT1-203	2148	445aa	ENSSSCP00000043754.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AIN1 A0A4X1SWS5	-

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Summary

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