Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PPEF1 ENSSSCG00000030274

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Description

protein phosphatase with EF-hand domain 1 [Source:VGNC Symbol;Acc:VGNC:91689]

Location

Primary_assembly X: 15,138,350-15,251,228 forward strand.

Sscrofa11.1:CM000830.5

About this gene

This gene has 4 transcripts (splice variants), 228 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000031758.4	PPEF1-202	2584	652aa	ENSSSCP00000026579.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1V1D7 I3LR47	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000034554.4	PPEF1-204	2527	594aa	ENSSSCP00000056036.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BHM3 A0A8D0X7Z0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000035020.4	PPEF1-201	2433	602aa	ENSSSCP00000028941.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1X021 K7GM53	-
ENSSSCT00000083214.2	PPEF1-203	2398	590aa	ENSSSCP00000070545.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UWE5 A0A5G2RGZ1	-

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Summary

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