Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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  - Gene tree
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ID History
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Gene: HS1BP3 ENSSSCG00000030115

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Description

HCLS1 binding protein 3 [Source:VGNC Symbol;Acc:VGNC:88976]

Location

Primary_assembly 3: 117,609,040-117,648,383 forward strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 5 transcripts (splice variants) and 145 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000097974.1	HS1BP3-203	3901	400aa	ENSSSCP00000075141.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4F7B2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000048752.2	HS1BP3-205	3925	399aa	ENSSSCP00000036141.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZXF2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000075262.2	HS1BP3-202	3898	399aa	ENSSSCP00000070298.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QZH8	-
ENSSSCT00000027306.2	HS1BP3-204	3227	397aa	ENSSSCP00000020312.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3L8F2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000084923.2	HS1BP3-201	672	215aa	ENSSSCP00000063296.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QF09	-

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Summary

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