Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
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Ontologies
Phenotypes
Genetic Variation
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External references
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ID History
- Gene history

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Gene: ECM1 ENSSSCG00000029230

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Description

extracellular matrix protein 1 [Source:VGNC Symbol;Acc:VGNC:87533]

Location

Primary_assembly 4: 98,615,778-98,621,836 reverse strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 3 transcripts (splice variants) and 209 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000030631.3	ECM1-201	2194	559aa	ENSSSCP00000021637.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SFT0 I3LC64	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000062882.3	ECM1-203	2230	541aa	ENSSSCP00000055856.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BHL7 A0A4X1SFR6	-
ENSSSCT00000070012.1	ECM1-202	1769	416aa	ENSSSCP00000059733.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SFR1 A0A5G2Q6T9	-

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Summary

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