Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LDLR ENSSSCG00000028512

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Description

low density lipoprotein receptor [Source:VGNC Symbol;Acc:VGNC:89671]

Location

Primary_assembly 2: 69,828,332-69,864,827 forward strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 7 transcripts (splice variants), 129 orthologues, 15 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000033970.3	LDLR-205	4355	848aa	ENSSSCP00000030589.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1BG34 K7GRR0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000070645.2	LDLR-202	5423	832aa	ENSSSCP00000070219.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RGB0	-
ENSSSCT00000091324.1	LDLR-204	5300	782aa	ENSSSCP00000059974.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2Q7C7 A0A8D1D6X6	-
ENSSSCT00000069615.1	LDLR-203	4735	838aa	ENSSSCP00000070721.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RHC2 A0A8D1BNM5	-
ENSSSCT00000029210.2	LDLR-206	4404	845aa	ENSSSCP00000021308.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VIY7 I3LB89	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000068362.2	LDLR-201	4216	845aa	ENSSSCP00000071214.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R284 A0A8D0TD45	-
ENSSSCT00000081506.2	LDLR-207	3894	675aa	ENSSSCP00000060758.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VK98 A0A5G2QFD9	-

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Summary

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