Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CLIC6 ENSSSCG00000028112

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Description

chloride intracellular channel 6 [Source:VGNC Symbol;Acc:VGNC:108640]

Location

Primary_assembly 13: 198,251,119-198,303,857 forward strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 6 transcripts (splice variants), 222 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000064671.3	CLIC6-206	4490	599aa	ENSSSCP00000045323.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AN23	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000050460.3	CLIC6-204	4457	588aa	ENSSSCP00000048783.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AXB4 A0A8D1UAH9	-
ENSSSCT00000048208.3	CLIC6-205	4119	409aa	ENSSSCP00000045430.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ANF3 A0A8D1I3W3	-
ENSSSCT00000045137.3	CLIC6-201	3443	250aa	ENSSSCP00000055380.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BH41 A0A8D1LKC6	-
ENSSSCT00000046533.3	CLIC6-202	3392	233aa	ENSSSCP00000058123.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BNX5 A0A8D1HZF7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000029780.4	CLIC6-203	3371	226aa	ENSSSCP00000022672.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LF32	-

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Summary

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