Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTCH1 ENSSSCG00000027312

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Description

patched 1 [Source:VGNC Symbol;Acc:VGNC:96513]

Location

Primary_assembly 10: 26,627,425-26,703,223 forward strand.

Sscrofa11.1:CM000821.5

About this gene

This gene has 3 transcripts (splice variants), 215 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000029331.4	PTCH1-202	7496	1451aa	ENSSSCP00000028104.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1EC93 I3LVF2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000063533.3	PTCH1-203	7292	1383aa	ENSSSCP00000047309.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AT85 A0A8D1HBU4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000052202.2	PTCH1-201	6889	1266aa	ENSSSCP00000056990.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BLE6 A0A8D1K9D9	-

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Summary

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