Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: COL2A1 ENSSSCG00000025523

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Description

collagen type II alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:86874]

Location

Primary_assembly 5: 78,350,137-78,380,718 reverse strand.

Sscrofa11.1:CM000816.5

About this gene

This gene has 2 transcripts (splice variants), 244 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000061640.3	COL2A1-201	5046	1486aa	ENSSSCP00000038204.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A2Q7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000047570.3	COL2A1-202	4883	1417aa	ENSSSCP00000036099.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZWS8	-

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Summary

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