Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Orthologues
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Gene: ZNF800 ENSSSCG00000024157

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Description

zinc finger protein 800 [Source:VGNC Symbol;Acc:VGNC:95306]

Location

Primary_assembly 18: 20,834,506-20,856,933 forward strand.

Sscrofa11.1:CM000829.5

About this gene

This gene has 4 transcripts (splice variants) and 215 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000058606.3	ZNF800-204	3947	665aa	ENSSSCP00000038115.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W130 A0A8D1BA18	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000057018.3	ZNF800-201	7689	623aa	ENSSSCP00000045337.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VWJ3 A0A8D1B408	-
ENSSSCT00000025503.4	ZNF800-203	2668	664aa	ENSSSCP00000021961.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0KFF2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000030524.4	ZNF800-202	1631	336aa	ENSSSCP00000049343.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AZM0	-

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Summary

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