Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TIA1 ENSSSCG00000023409

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Description

TIA1 cytotoxic granule associated RNA binding protein [Source:VGNC Symbol;Acc:VGNC:93975]

Location

Primary_assembly 3: 72,240,600-72,277,296 forward strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 3 transcripts (splice variants), 132 orthologues and 39 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000027073.3	TIA1-202	5669	386aa	ENSSSCP00000026866.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W9U0 A0A4X1W9V2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000060792.3	TIA1-203	5369	375aa	ENSSSCP00000037509.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A0R0 A0A4X1W9J5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000041698.3	TIA1-201	1082	285aa	ENSSSCP00000033299.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W9E0 A0A8D1HTH2	-

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Summary

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