Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: ATP2B2 ENSSSCG00000023084

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Description

ATPase plasma membrane Ca2+ transporting 2 [Source:VGNC Symbol;Acc:VGNC:85649]

Location

Primary_assembly 13: 66,528,323-66,897,128 reverse strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 9 transcripts (splice variants), 438 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000061352.3	ATP2B2-201	5216	1243aa	ENSSSCP00000052302.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B705 A0A8D0N7G3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000038542.3	ATP2B2-203	7155	1188aa	ENSSSCP00000036866.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZYZ7 A0A8D1D6Z5	-
ENSSSCT00000044254.3	ATP2B2-204	7095	1168aa	ENSSSCP00000035789.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZVU9 A0A8D0SKM7	-
ENSSSCT00000056176.3	ATP2B2-205	6969	1212aa	ENSSSCP00000034401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZSF2 A0A8D1F571	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000013960.4	ATP2B2-209	6038	1154aa	ENSSSCP00000013577.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1BNP4 F1S2B2	-
ENSSSCT00000012666.5	ATP2B2-202	5192	1235aa	ENSSSCP00000012333.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0WYI2 F1SQA7	-
ENSSSCT00000096837.1	ATP2B2-208	4230	1236aa	ENSSSCP00000075541.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4F9N1	-
ENSSSCT00000093961.1	ATP2B2-206	4188	1222aa	ENSSSCP00000079759.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FK99	-
ENSSSCT00000053835.3	ATP2B2-207	4143	1207aa	ENSSSCP00000042785.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AFW0	-

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Summary

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