Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: GALNT13 ENSSSCG00000022671

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Description

polypeptide N-acetylgalactosaminyltransferase 13 [Source:VGNC Symbol;Acc:VGNC:95992]

Location

Primary_assembly 15: 61,440,656-62,047,336 forward strand.

Sscrofa11.1:CM000826.5

About this gene

This gene has 4 transcripts (splice variants), 243 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000054425.2	GALNT13-203	4965	572aa	ENSSSCP00000053112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B9E6 A0A4X1VKQ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000074747.1	GALNT13-202	6102	507aa	ENSSSCP00000068574.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RD09 A0A8D1C6P1	-
ENSSSCT00000065917.2	GALNT13-204	4894	556aa	ENSSSCP00000047448.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AU55 A0A4X1VSE6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000027912.3	GALNT13-201	4528	558aa	ENSSSCP00000028132.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1JGR8 I3LVI0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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