Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TNFRSF1B ENSSSCG00000022208

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Description

TNF receptor superfamily member 1B [Source:VGNC Symbol;Acc:VGNC:94264]

Location

Primary_assembly 6: 72,195,435-72,231,147 forward strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 5 transcripts (splice variants), 316 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000028399.3	TNFRSF1B-203	3763	461aa	ENSSSCP00000025907.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W832 I3LP81	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000073647.1	TNFRSF1B-204	3739	453aa	ENSSSCP00000069251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W7B7 A0A5G2QWK9	-
ENSSSCT00000022767.4	TNFRSF1B-202	3613	411aa	ENSSSCP00000024544.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W9C3 I3LKD0	-
ENSSSCT00000078711.2	TNFRSF1B-201	1460	437aa	ENSSSCP00000062243.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QDM7 A0A8D2CCJ6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000068544.1	TNFRSF1B-205	1098	365aa	ENSSSCP00000072363.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RDC4 A0A8D1BV66	-

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Summary

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