Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: RBPJ ENSSSCG00000022155

.

Description

recombination signal binding protein for immunoglobulin kappa J region [Source:VGNC Symbol;Acc:VGNC:98956]

Location

Primary_assembly 8: 19,922,779-20,166,754 forward strand.

Sscrofa11.1:CM000819.5

About this gene

This gene has 7 transcripts (splice variants), 287 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000038081.2	RBPJ-206	1654	491aa	ENSSSCP00000038442.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1V8S0 A0A8D0HYD2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000060917.3	RBPJ-205	5752	487aa	ENSSSCP00000038124.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A324 A0A8D1KDI8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000056023.3	RBPJ-201	5512	481aa	ENSSSCP00000055798.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1R7V9 A0A8D1W3B6	-
ENSSSCT00000087175.1	RBPJ-202	4691	486aa	ENSSSCP00000060956.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VAZ3 A0A8D1M2Y4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000103921.1	RBPJ-203	4535	434aa	ENSSSCP00000078125.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FFV5	-
ENSSSCT00000044877.3	RBPJ-207	1870	440aa	ENSSSCP00000055469.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BGJ7	-
ENSSSCT00000038237.3	RBPJ-204	1827	454aa	ENSSSCP00000043604.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0RWX6 A0A8D2A4S5	-

.

Summary

.

.